| Harmonization and
Exchange of Genetic Recessives |
The World Holstein Friesian Federation (WHFF has reviewed the
recording of Genetic Recessives prevalent in the Holstein breed
today as a positive approach and with a view of harmonization and
exchange.
Since there is an increasing concentration of breeding within
bloodlines and continued widespread use of a limited number of
sires, it is fundamental to the advancement of the breed that all
available information, both desirable and undesirable, be made
known to breeders, to potential purchasers of animals or to purchasers
of artificial service from sires.
The full disclosure of named genetic defects / recessives in the
Holstein population is useful information in making breeding decisions
on farm, allows the breed an opportunity to minimize the impact
of any associated problems and to breed around / eliminate it from
the breed.
Animals of any breed or species may possess undesirable inherited
factors which may or may not exhibit themselves in the animal itself,
but which may be transmitted to its offspring. Transmission of
such a factor may take place for a considerable period of time
from one generation to another before the factor manifests itself
in an identifiable form. By that time, the factor can be widely
seeded as a recessive gene in many herds and thousands of animals
without breeders being aware of the potential loss that they might
suffer. Such a situation might have an adverse effect upon their
breeding programs and the future of their herds.
It is to be expected, that due to improved data collection and
progress in genetic investigation of traits an increasing number
of genetic recessives will be detected and/or published. Many of
them will be restricted in their value to limited consumer markets
or environments.
Initial Phase of Discovery and Research of a New Recessive
The first step in the recognition process of a new recessive is
the identification of the condition. Once the condition is reported
a series of facts should be gathered so that an initial evaluation
of the condition can be made.
Has evidence been provided that establishes the presence of the
condition in the cattle population?
Is the mutation within germinal or somatic cells?
What breed or breeds are involved?
Is the condition lethal and at what time in life is the condition
expressed?
What proportion of the population may be affected?
Are similar conditions known in other species?
Are tests currently available to detect the condition and if so
what do they cost?
Are the tests definitive and if not what are their limitations?
Secondary Phase of Research
The secondary phase of research begins when some sort of diagnostic
test becomes or is available. Preliminary testing of individuals
is a necessary part of the research process and will allow the
researchers to more clearly:
Establish the physiology of the condition
Determine the mode of inheritance
Determine the economic consequences
Establish an accurate, rapid and inexpensive diagnostic test, if
needed
Recommend procedures for developing controls, if needed.
Classification of the Condition
| Class 1 |
Of lethal proportions with manifestation and diagnosis occurring
just prior to entering productive life |
| Class 2 |
Of lethal proportions, but identified at birth or early in
life |
| Class 3 |
Lethal in the early embryonic stages or not lethal but seriously
impairs production or reproduction |
| Class 4 |
Not lethal but has a small effect on production or reproduction;
economically insignificant |
| Class 5 |
No known impairment on production or reproduction |
Public Disclosure with Discretion
Once the preliminary testing of individuals is completed and some facts
about the gene frequency and economic implications have been established,
results from all of the preliminary testing should be released to all bull
controllers and the appropriate breed organization or designee. This is
a very sensitive period and great care should be taken so that control
programs are implemented without creating undue alarm throughout the industry.
It seems responsible to keep test results confidential until research
has documented the accuracy of the test and the significance of the condition
so that the tests results can be properly interpreted. However, withholding
tests results for an extended period of time puts organizations at some
liability risk for continuing to market a product that they were aware
was defective. Since the chronology of events will vary by condition, the
proper timing for releasing test results will be a decision that will need
to be made separately for each condition. Complete public disclosure of
the condition and identification of carriers should not occur until either
the manuscript has been accepted for publication or some expert review
has been formalized.
Guidelines for Adding to WHFF Master List
Principally, each country should be free to include as many genetic recessives
as desired into their official national pedigrees. However, for official
international exchange of pedigrees a master list is necessary for those
genetic recessives, which obligatory have to be included into the pedigree
when the individual is tested for it.
The phenotypic description of the trait and proof of its inheritance are
obligatory requirements for adding a genetic recessive to the WHFF master
list. Additionally, the procedure of testing has to be listed. Testing
can be done by informative mating, laboratory test of phenotypes or genetic
tests of causative genomic variation. Wherever available detection of the
causative genetic mutation of a recessive should be preferred.
To enable critical review of this information, publication of these data
in a peer reviewed international scientific journal is preferred. Equivalent
to this is a publicly available international patent file. For each genetic
recessive a catalogue comprising detailed, published description of phenotype,
inheritance and detection should be established.
In the case of inconclusive test results, records must be maintained by
the responsible breed association (s). It would not be prudent to label
an animal a carrier as the result of a test that may not be valid, thus
negatively affecting the value of the animal.
The Board of Directors and/or each national Holstein Association reserve
the right to define the nature, type and form of the information that is
accepted, produced and retained on file by the respective Association.
Exchange of Genetic Recessives
An electronic exchange mechanism is required for the efficient and effective
exchange of carrier and tested free animals and the corresponding recessive
code to all WHFF herdbooks / societies on a timely and/or or as needed
basis. This work is being addressed by the WHFF- EDE Working Group and
chaired by Jean Rainaut, Prim’Holstein, France.
Harmonization of codes and nomenclature is imperative for overall accuracy,
assignment and a perquisite for electronic data exchange. With each breed
association maintaining its own file instead of having one central master
file, the exchange process as proposed is viewed as more practical and
less vulnerable to misinterpretation or error. Survey respondents indicate
their willingness to the publishing of recessive codes and animals on their
respective websites and are willing to transmit electronic files containing
the identification of carrier and tested free animals.
However Dr. Christa Kuehn, Germany and WG member, re-opinions that in
most businesses global networks are set up, but in Holstein breeding we
propose a structure, which may cause extra work and a reduction of data
quality due to repetitive bilateral data plausibility checks and updates.
Further thought can be given to a central database for those carefully
selected defects on the master list, which are mandatory for recording
in each population? Localisation of a recessive repository database at
Interbull would be in line with a central database on performance traits
there and would overcome many problems concerning identification problems
for individuals. *Council has agreed to explore possibilities with Interbull
and ICAR.
Master List of WHFF Approved Recessives
The list is in keeping with EDE WG and its Appendix 4. The gene and corresponding
expression codes have been modified and expanded in keeping with WHFF General
Assembly 2004 encouragement of a coding system for exchange that was simple,
expandable and easy to use, interpret and understand.
Expression Code: F = tested and non-carrier, C = carrier
| Name of gene |
Description |
Gene Code |
Gene and Expression codes |
| BLAD |
Bovine Leucocyte Adhesion Deficiency |
BL |
BLC = Tested Carrier of BLAD;
BLF= Tested non-carrier of BLAD |
| MULEFOOT |
Mule-Foot |
MF |
MFC = Tested Carrier of Mulefoot ;
MFF = Tested non-carrier
of Mulefoot |
| DUMPS |
Deficiency of Uridine Monophosphate Synthase |
DP |
DPC = Carrier of Dumps;
DPF = Tested non-carrier of
Dumps |
| CVM |
Complex Vertebral Malformation |
CV |
CVC = Tested Carrier of CVM;
CVF = Tested non-carrier of CVM |
| FACTOR XI |
Factor XI |
XI |
XIC = Tested Carrier of FACTOR XI
XIF = Tested non-carrier of FACTOR XI
|
| CITRULLINAEMIA |
Citrullinaemia |
CN |
CNC = Tested Carrier of Citruillinaemia
CNF = Tested non-carrier of citruillinaemia
|
Toward Harmonization (Re-confirmation)
Gene codes and/or gene expression codes should not be part of an animal’s
name but rather utilized as a secondary or separate code or field. This
approach facilitates the accurate exchange of information and negates the
need to rename or amend names initially penned to animals given assignment
of singular or multiple recessive codes.
It is recognized that new or changes to named recessives and expression
codes might be difficult to implement by all member herdbooks / societies
/ countries. As such, each herdbook / country reserves the right to define
the nature, type and form of information that is accepted, published and
retained within its jurisdiction. However, each participating herdbook
is expected to comply with the WHFF gene codes and expressions (appendix
4) for the purposes of international data exchange of recessives.
Additional or new recessives / traits not currently provided for on the
master list or pending approval by WHFF Council should not be expression
coded nor exchanged prior recognition / consensus of WHFF Council.
Herdbooks / societies / countries with experience or particular interest
should be encouraged and invited to initiate or lead submission to WHFF
Council for recognition and approval of new recessives / defects (Factor
XI, Polled and Bulldog for example) in keeping with steps of the program
previously described.
Hopefully, these provisions are viewed as productive in support of harmonization,
the objective of Council and globalization of the Holstein breed and fraternity.
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